Circular RNAs (circRNAs) are a recent addition to the expanding universe of RNA species and originate through back-splicing events from linear primary transcripts. CircRNAs show specific expression profiles with regards to cell type and developmental …
Circular RNAs (circRNAs) are a recent addition to the expanding universe of RNA species and originate through back-splicing events from linear primary transcripts. CircRNAs show specific expression profiles with regards to cell type and developmental …
Circtools is a modular, Python3-based framework for Circular RNAs (circRNAs) tools that unifies several functionalities in single command line driven software.
The introduction of next-generation sequencing techniques and especially the high-throughput systems Solexa (Illumina Inc.) and SOLiD (ABI) made the mapping of short reads to reference sequences a standard application in modern bioinformatics. …
The introduction of next-generation sequencing techniques and especially the high-throughput systems Solexa (Illumina Inc.) and SOLiD (ABI) made the mapping of short reads to reference sequences a standard application in modern bioinformatics. …
SARUMAN uses a qgram index based filter algorithm followed by a modified Needleman-Wunsch alignment. To speed up the normally time-consuming alignment step all alignments are processed on a NVIDIA graphics card to exploit the massive parallel architecture of new graphics processing units (GPUs).